---
title: Vizgen Mouse Liver Data Set
description: Vizgen MERFISH Mouse Liver data set.
---

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# MERFISH Mouse Liver Map

Explore the MERFISH Mouse Liver Map Data Set

This dataset contains a MERFISH measurement of a gene panel containing 347 total genes. The dataset includes the list of detected transcripts, gene counts per cell matrix, additional spatial cell metadata, cell boundary polygons, and DAPI images

 

Data Set Overview: 

| **Species Type** | **Mouse** |
| --- | --- |
| **Tissue Type** | **Liver** |
| **Gene Panel Size** | **347** |
| **Number of Samples** | **4 total; 2 animal liver tissues, 2 replicates of each** |
| **Total Transcripts Detected** | **1,205,513,113** |
| **Total Cells** | **1,275,831** |

[![Access Full Dataset](https://no-cache.hubspot.com/cta/default/9150442/00e87dfa-efaa-4679-b729-a1d27823cee4.png)](https://cta-redirect.hubspot.com/cta/redirect/9150442/00e87dfa-efaa-4679-b729-a1d27823cee4)

[![Explore Data on Google Colab Notebook](https://no-cache.hubspot.com/cta/default/9150442/ad546b89-6f10-451a-8685-a9c28be9fe86.png)](https://cta-redirect.hubspot.com/cta/redirect/9150442/ad546b89-6f10-451a-8685-a9c28be9fe86)

| **Animal Number** | **Replicate Number** | **Sample Name** | **Full Data Set (Includes  transcripts, cells and images)** |
| --- | --- | --- | --- |
| Animal 1 | Replicate 1 | L1R1 | [Access Data Set](https://console.cloud.google.com/storage/browser/vz-liver-showcase/Liver1Slice1?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&prefix=&forceOnObjectsSortingFiltering=false) |
| Animal 1 | Replicate 2 | L1R2 | [Access Data Set](https://console.cloud.google.com/storage/browser/vz-liver-showcase/Liver1Slice2?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&prefix=&forceOnObjectsSortingFiltering=false) |
| Animal 2 | Replicate 1 | L2R1 | [**Access Data Set**](https://console.cloud.google.com/storage/browser/vz-liver-showcase/Liver2Slice1?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&prefix=&forceOnObjectsSortingFiltering=false) |
| Animal 2 | Replicate 2 | L2R2 | [Access Data Set](https://console.cloud.google.com/storage/browser/vz-liver-showcase/Liver2Slice2?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&prefix=&forceOnObjectsSortingFiltering=false) |

To cite this data, please use: Vizgen MERFISH Mouse Liver Map January 2022

Legal Notice:

By submitting the registration form and accessing or using any data from this dataset, you hereby agree on your own behalf and on behalf of any entity for which you are accessing or using such information or data, to defend, indemnify and hold harmless Vizgen, Inc. and each of its officers, directors, shareholders, employees, agents, and attorneys, from and against any and all claims, losses, damages, liabilities, and costs (including without limitation, attorney’s fees) arising from or related to your use of such information and/or data, except to the extent such claim, losses, damages or costs resulting from the gross negligence or willful misconduct of Vizgen.

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